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#VCBS2019 In News: The Most Popular Tweets | Australia

Lots of applications to bioinformatics positions but recruiters still looking for more. Maybe that’s why #VCBS2019.

#VCBS2019 Twitter

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#VCBS2019 Top Tweets On Twitter

Lots of applications to bioinformatics positions but recruiters still looking for more. Maybe that’s why #VCBS2019.

#VCBS2019 Photo

Thanks @methylnick -- staying cool under pressure, loading talks at #vcbs2019.

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SH tried to use superFreq but it struggled with the large data size. We have superFreq running on cancer-normal genomes, but 20-30 samples 100x read depth is still prohibitive it seems! :D We should talk about that more @SHollizeck, I still want it running! #vcbs2019.

On now, our PhD student @SHollizeck is speaking about his work on variant calling from CASCADE patient samples. #vcbs2019.

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Feng Yan: A 9-gene score for predicting B-ALL overall and relapse risk B-ALL risk typically based on karyotype. FY uses LASSO regression to device a classifier based on expression with higher hazard ratio than clinical classification. #vcbs2019.

Fantastic talk by @camerongenomics about #GRIDS2 at @VicCanBioinf #vcbs2019.

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DC: GRIDSS2 is not only a breakpoint caller, but also a breakend caller, allowing it to call breakpoint into unmappable sequences such as telomeres or viral insertions. #vcbs2019.

Yet another thing to learn. Hartwig cohort. 4000 WGS dataset of patients. Wow. #cancerbioinformatics #vcbs2019 @VicCanBioinf.

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Need to look for cryptic fusions? It is moments like these you need MINTIE. @marekcmero @VicCanBioinf #VCBS2019.

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South Africans are very diverse. Vanessa Hayes. Compared to Europeans. There are three groups genetically but all identify as South African. @VicCanBioinf #vcbs2019.

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VH: want a new way to detect somatic structural variants, that is not sequencing. bionano can detect structural variants: #vcbs2019.

Reminder that there are readable alternatives to 5-way venn diagrams. Try upset plots: #vcbs2019.

@_hollywhitfield is presenting her great Master project at @VicCanBioinf about competing endogenous RNA (ceRNA) in #EMT in breast cancer. #VCBS2019.

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Next up at #vcbs2019 is Dr @yihchih. On the topic of the epigenetic drivers of haematopoiesis..

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Adria Closa describing splicing signatures at #vcbs2019. SUPPA to look at Percent Spliced-In values looks interesting..

Fastest fingers in the lecture theatre! @methylnick rocking AV duties at #VCBS2019 while asking probing questions of speakers. Multitasking at its finest. @VicCanBioinf.

Melissa Davis talking on behalf of Soroor Hediyeh-Zadeh of @WEHI_research talking about their tool, scDecaf. Reference free annotation of clusters in single cell RNA seq data. @VicCanBioinf #vcbs2019.

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AC showing data from their tool SUPPA that analyses differential splicing. #VCBS2019.

Adria Closa of #ANU speaking on RNASeq fusion in paediatric leukaemia. #vcbs2019.

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Adria Closa: Identification of RNA splicing therapeutic targets in high-risk paediatric acute leukaemia looking at almost 2k RNA-Seq leukemia samples. #VCBS2019.

AL: RNA-Seq is good for fusion detection in (for example) B-ALL. But can also detect focal deletions of just a few exons of a gene from RNA-Seq, which is what Toblerone does. Showing examples from IKZF1. RNA-Seq calls match validation in DNA well. #VCBS2019.

Next up. Emma Gail from @MonashUni talking about PRC2 in cancer. #vcbs2019.

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Anna Trigos from my group at @PeterMacRes explaining how mutated cancer genes disrupt evolutionary conserved gene regulatory patterns at #VCBS2019.

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Key points from the amazing Cristin Print covering data integration, clinical values and indigenous cancer genomics! @VicCanBioinf #VCBS2019.

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AT divides cancer driver genes into single cell types such as proliferation, and multicellular, such as immune evasion. Evolutionary age of genes helps classification. She has been doing network analysis of cancer based on this classification. #vcbs2019.

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